Window no longer 'brings to front'

[FUGIT1VE]

While running Dolphin I have experienced no issues with no adjustments to any settings, until today. I loaded it up and the window refuses to recognize me clicking on it. So when I go to hit a key it doesn't register my keyboard since it is in fact not the focused window. Reinstalled restarted reset my pram shut down and re-downloaded everything. Any ideas as to what went wrong and how to fix?

Currently running:
Mac OSX 10.12.2 15' Macbook pro
2.5 GHz Intel Core i7
NVIDIA GeForce GT 750M 2048 MB
Intel Iris Pro 1536 MB
16 GB 1600 MHz DDR3

Thank you