(03-21-2015, 12:45 PM)NKF98 Wrote: You will need to put everything back in manually (including your save files).What? The save files, configs and things like that will be working automatically after updating, unless you manually deleted them or something. Just don't touch the Documents\Dolphin Emulator folder, and everything will be fine.
Also, I doubt that updating from 4.0-5836 will help. Sure, updating is always good to do, but that version is barely a week old and there haven't really been any merges since then that will help with this problem.