Skyward sword stuck on

[Coral Beef]

Hello Dolphin!
I recently borrowed my friend's offical wiimote wiimotion plus addon to test and see if it worked or not. At first, everything was fine. It worked 100% perfect and i was playing like a boss. Then i ran out of batteries on my wiimote. I replaced the batteries (They were about to go anyways) with brand new ones and attempted to continue playing.
Then when i loaded the state i had saved, it said there was a problem with the connection. Then i re-did everything that you have to go through with skyward sword which is, adding the wiimotion plus thing, adding the nunchuck and putting it on a flat surface to calibrate. Then when i get to this stage...

Nothing happens. I have a wireless sensor bar which i know works 100%. It is working with other games perfectly. zelda SS was working like 2 hours ago and now it's just decided not to work anymore.
Interestingly, if i press the home button on my wiimote, the home screen pops up but my wii cursor thing doesn't pop up at all. It's like it ABSOLUTELY is not picking up the IR when i'm playing SS...

One thing i might add, like i said before. I am testing the wii motion controls, so i wanted a sword and the beginning bit is really long and boring (Like most zelda games) and i wanted to test the sword motion controls. So i got a Zelda SS .bin save and loaded it. Problem was, it didn't load when i tried to... However, zelda SS did work after attempting to load that save but it was shortly after that when it stopped working.
Not sure how to revert wayyy back either...

Any advice would be greatly appreciated. I chose not to post in the skyward sword controls thread because it seems like it's not specifically skyward sword, (Although in MY case it is). It seems like it could have happened to any of my games...

P.S i'm using official nintendo EVERYTHING except from the wireless sensor bar.
I don't feel posting my settings is really needed here because it's not a performance or graphical problem.

[Coral Beef]

Okay, some added info here. I got the wiimote to work properly! I pressed home, waited for the little hand to come up by wiggling it around, then pressed home and put the hand in the middle and pressed A! However, is there a simple fix to this?

I also am unable to save my game. When i try and save, normally i get something saying it saved to blah blah blah... But for some reason nothing pops up and when i try and continue from a save it says it's been corrupted. Lucky for me save states work. But i'd like to be able to save normally =[