Okay, that issue seems to have resolved itself, I honestly didn't change anything and it started working fine. I have one more issue then I should be good. Occasionally, as I'm playing my controls will just stop working. They seem to get stuck on whatever my last input was when this happens, if I was running Mario will keep running until he gets stuck (in which case he just indefinitely runs into the wall) or dies. I'm currently just using my keyboard before I try anything more complicated, unless there's a good reason to try using a gamepad.
Thanks for all the help. You guys are awesome.
Thanks for all the help. You guys are awesome.