Issue's with Dolphin 3.5

[Sepulcher]

I have also had an issue with Dolphin 3.5. It's a different one though. It seems as though 3.0 runs some things a bit smoother than 3.5 on my system for some games. I also used to be able to record with Fraps alongside many games with no problems, and now I get major stuttering and slow motion visuals while recording. Skyward Sword is MUCH faster, but games like Xenoblade Chronicles have issues like lagging menu sounds. This was not the case with Dolphin 3.0. I can't even record Wind Waker anymore. It runs fast while recording until I hit an enemy, which is not what happened on Dolphin 3.0.

Here's a video of how Wind Waker ran on my system before. This is at 2x IR.
http://www.youtube.com/watch?v=Qn6Ve6y26AI