Input recognised in GCPad congif, but not in-game

[Jamwa]

So when I configure the GCPad to be used, I can press any button i have mapped using GlovePIE and PPJoy and it will be recognised in the configuration section. I am pressing A, X, Z, R, and R-Dpad, and pushing the main stick and c-stick, and they correspond with the displayed input as shown here:

Although this works, nothing works in-game, so i cannot press A, X, Z, or anything, even if i have the game open and i open up this config and it shows me pressing the input.

The controller I am using is a Classic controller via Bluetooth, which has been mapped using GlovePIE and PPJoy.

The Dolphin build is win64 v3.5 - 367

Ive tried to use the CC in two games, Sonic Adventure Battle 2 and The Legend of Zelda: Wind Waker.

Also I'd like some help with the best configuration for Sonic Adventure Battle 2, because I was getting constant crashes on Dolphin 3.0, and just updated to try and stop this issue, but this controller issue has arisen.

here's my current settings
http://sphotos-c.ak.fbcdn.net/hphotos-ak...0925_n.jpg
http://sphotos-d.ak.fbcdn.net/hphotos-ak...6599_n.jpg
http://sphotos-f.ak.fbcdn.net/hphotos-ak...4728_n.jpg
http://sphotos-a.ak.fbcdn.net/hphotos-ak...3651_n.jpg
http://sphotos-g.ak.fbcdn.net/hphotos-ak...4034_n.jpg
http://sphotos-e.ak.fbcdn.net/hphotos-ak...1865_n.jpg
http://sphotos-c.ak.fbcdn.net/hphotos-ak...8985_n.jpg
http://sphotos-b.ak.fbcdn.net/hphotos-ak...7201_n.jpg
http://sphotos-h.ak.fbcdn.net/hphotos-ak...6802_n.jpg

[Billiard26]

1. 3.5-367 is old. Download a recent revision from the official website.
2. Attach your Dolphin.ini if you still have problems.

[Jamwa]

I downloaded the latest stable version, and the problem is still there.
It says I'm not allowed to attach the Dolphin.ini, so I updated the op with some images of my config/graphics.

[Billiard26]

In the main Dolphin config dialog, "Gamecube" tab, set Port 1-4 to something sane.

[Jamwa]

In the main Dolphin config dialog, "Gamecube" tab, set Port 1-4 to something sane.

Oh right thanks haha, must've changed when I updated hehe.
Any idea where I can find the optimal settings for Sonic; it was crashing a lot in the previous versions.
Thanks again for the help