First port controls other ports

[1suck]

So I am having a problem of using two controllers at the same time. My first port works just fine and I am able to play by myself. Its when i connect a second controller it does not work. I set port 2 as a standard controller and it reads it because its able to map out the buttons for it. The problem is it reads port 2 as port 1 even if i change the 0 to a 1. So player 1 controls 2 controllers at the same time in game. Any way I could fix that?