If you switch the settings in dolphin from using a memory card to using the GCI folder, game saves will be saved as individual .gci files inside of a folder instead of as a memory card file. This makes it so that one bad save file won't break your entire card of saves.
Do you have either 4.0-315 or 5.0 running in portable mode?
Do you have either 4.0-315 or 5.0 running in portable mode?

